Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108253259_108253669_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

108253259 - 108253669

Intron Length:

411

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTGGGTATT

5'SS Class:

major

3'SS Sequence:

TCATGTTCTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTCAT

U12 Branch Point Sequence:

TTTTTTGTCATG

Flanking Amino Acid:

KTPGPPISTHSESQLGTQQK

Intron Amino Acid Position:

102

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.3

0.38

1.1

71.9

39.5

Major BPS

84.8

0.86

1.1

85.7

34.9

Major PPT

78.2

0.63

0.9

69.4

41.5

Minor 5ss

-1.5

3.3

42.5

Minor BPS

-0.4

2.3

61.64

41.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011832

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034777

108237018 - 108267066

30049

ENSAPLT00000032723

108237018 - 108267066

30049

ENSAPLT00000012358

108237018 - 108267066

30049