Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108260685_108260797_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

5UTR

Intron Coordinates:

108260685 - 108260797

Intron Length:

113

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTTTCAGTT

5'SS Class:

weak_major

3'SS Sequence:

TTTGTTTTTCAAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTCAT

U12 Branch Point Sequence:

TTTTTCTTCATT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

59.4

0.22

1.3

63.7

40.7

Major BPS

87.4

0.93

0.9

87.9

29.5

Major PPT

80.1

0.68

79.2

38.4

Minor 5ss

44.4

-0.6

3.3

65.6

45.6

Minor BPS

73.4

0.82

1.7

91.07

32.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011832

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034777

108237018 - 108267066

30049

ENSAPLT00000032723

108237018 - 108267066

30049

ENSAPLT00000012358

108237018 - 108267066

30049