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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108260916_108261257_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
108260916 - 108261257
Intron Length:
342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGAGTG
5'SS Class:
major
3'SS Sequence:
ATACTGAATGTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
TTTTCTCTAATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.2
63.7
40.7
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
59.1
0.21
1
52.7
41
Minor 5ss
36.5
-1.5
3.3
47.4
48.1
Minor BPS
72.4
0.7
1.6
83.86
29.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011832
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034777
108237018 - 108267066
30049
ENSAPLT00000032723
108237018 - 108267066
30049
ENSAPLT00000012358
108237018 - 108267066
30049