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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108265137_108265563_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
108265137 - 108265563
Intron Length:
427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTAACTCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
AGTTGTTTAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1.2
77.6
32.8
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
76.6
0.6
0.8
74.3
36.1
Minor 5ss
27.4
-2.6
2.9
31.8
42.6
Minor BPS
68.5
0.66
1.7
82.97
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011832
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034777
108237018 - 108267066
30049
ENSAPLT00000032723
108237018 - 108267066
30049
ENSAPLT00000012358
108237018 - 108267066
30049
Gene:
Ensembl Gene ID:
ENSAPLG00000019817
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040387
108264794 - 108284102
19309