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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108265705_108266899_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
108265705 - 108266899
Intron Length:
1195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGAT
5'SS Class:
strong_major
3'SS Sequence:
ATCCCACGGCTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TATGTTTTAAAA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
81.4
32.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
50.9
0.02
1
43.9
37.2
Minor 5ss
33
-1.9
3.5
48.2
47.9
Minor BPS
61.3
0.35
1.5
69.01
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011832
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034777
108237018 - 108267066
30049
ENSAPLT00000032723
108237018 - 108267066
30049
ENSAPLT00000012358
108237018 - 108267066
30049
Gene:
Ensembl Gene ID:
ENSAPLG00000019817
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040387
108264794 - 108284102
19309