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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108273115_108276269_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108273115 - 108276269
Intron Length:
3155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAGTAC
5'SS Class:
major
3'SS Sequence:
TCCTCCCTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCCTCCCTAACA
Flanking Amino Acid:
GTGALEGKAKAGKLKDGARS
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.49
1.1
63.3
37.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
74.2
0.54
0.9
69.3
29.9
Minor 5ss
35
-1.7
3.6
48.7
47.8
Minor BPS
68.6
0.58
1.7
75.88
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019817
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040387
108264794 - 108284102
19309
ENSAPLT00000022696
108272926 - 108284102
11177