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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108276423_108278370_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108276423 - 108278370
Intron Length:
1948

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TCAATTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTGCCTTCAATT
Flanking Amino Acid:
NSVQAFFGLEMLTKQLEVLG
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
76.9
33.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
81.9
0.72
0.9
76.5
37.1
Minor 5ss
31.4
-2.1
3.1
39.2
46.2
Minor BPS
62.8
0.48
1.5
77.51
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019817
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040387
108264794 - 108284102
19309