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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108281197_108282508_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108281197 - 108282508
Intron Length:
1312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTAAAATATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTCTGTTTAAAA
Flanking Amino Acid:
GEHMLSKAFQSHLKASEHSA
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.1
1.13
0.6
93.5
20.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
67.9
0.4
1.1
65
44.3
Minor 5ss
38.4
-1.3
2.8
52.3
44.3
Minor BPS
60
0.31
1.9
71.99
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019817
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022696
108272926 - 108284102
11177
ENSAPLT00000040387
108264794 - 108284102
19309