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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108282606_108283197_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
108282606 - 108283197
Intron Length:
592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTGA
5'SS Class:
major
3'SS Sequence:
CTTCTATTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAATAT
U12 Branch Point Sequence:
CTTCTATTAACA
Flanking Amino Acid:
GFEANAPAFDRHFRTLKNLY
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69
38.3
Major BPS
50.9
0.02
1.1
47.4
35.7
Major PPT
77.8
0.63
0.9
73.5
34.7
Minor 5ss
35.4
-1.7
3.3
47.1
48.3
Minor BPS
63.8
0.43
1.6
73.68
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019817
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022696
108272926 - 108284102
11177
ENSAPLT00000040387
108264794 - 108284102
19309