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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108283260_108284027_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108283260 - 108284027
Intron Length:
768

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
CTTCATGTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTAATGTAATC
Flanking Amino Acid:
PLFWEQPGLQVGSHRVRMSR
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
70
0.45
0.9
64.3
36.4
Minor 5ss
38.8
-1.3
2.8
48.8
47
Minor BPS
48.8
-0.1
2.1
67.66
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019817
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040387
108264794 - 108284102
19309
ENSAPLT00000022696
108272926 - 108284102
11177