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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108288577_108298626_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108288577 - 108298626
Intron Length:
10050

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTCGA
5'SS Class:
major
3'SS Sequence:
CTTCTCTCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAACAT
U12 Branch Point Sequence:
ACCATCATAACA
Flanking Amino Acid:
MFESGAVAVLSSAEKDTIKN
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
62.2
43.9
Major BPS
62.2
0.3
1.1
69.4
35.8
Major PPT
82.5
0.73
0.7
80.7
24.5
Minor 5ss
36.5
-1.5
3
51.2
45.1
Minor BPS
50.5
0.01
1.7
58.85
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027036
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043583
108288482 - 108298864
10383