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Intron Name: Anas_platyrhynchos_platyrhynchos_1_108320027_108320778_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

108320027 - 108320778

Intron Length:

752

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTTGT

5'SS Class:

strong_major

3'SS Sequence:

TAATCTGTTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAT

U12 Branch Point Sequence:

GAAATATTAATC

Flanking Amino Acid:

VVNAENKNTQMLLKALLLRM

Intron Amino Acid Position:

780

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.3

0.86

0.9

81.6

33.2

Major BPS

91.8

1.04

0.7

90.2

19.3

Major PPT

76.7

0.6

73.5

41.3

Minor 5ss

43.6

-0.7

2.9

58.5

40.3

Minor BPS

49.2

-0

1.6

55.26

Associated Gene:

Gene:

PAXBP1

Ensembl Gene ID:

ENSAPLG00000011625

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012163

108314166 - 108340943

26778

ENSAPLT00000043570

108314166 - 108340943

26778