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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108325394_108325864_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
108325394 - 108325864
Intron Length:
471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAGCAC
5'SS Class:
major
3'SS Sequence:
TGATCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATATAATTGATT
Flanking Amino Acid:
KRRTAEREARRARRRQAREQ
Intron Amino Acid Position:
585

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
57.3
42
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
83.3
0.75
0.9
80.9
36.4
Minor 5ss
29
-2.4
3.6
40.5
46
Minor BPS
52.2
0.15
1.8
72.48
37.9

Associated Gene:

Gene:
PAXBP1
Ensembl Gene ID:
ENSAPLG00000011625
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043570
108314166 - 108340943
26778
ENSAPLT00000012163
108314166 - 108340943
26778