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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108325965_108328249_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108325965 - 108328249
Intron Length:
2285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTCAGTCCA
5'SS Class:
major
3'SS Sequence:
TGTAATTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
AACATTTTAATT
Flanking Amino Acid:
DESSEFSSHSNKALMAPNLD
Intron Amino Acid Position:
552

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.3
65.3
40.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79.6
0.67
0.9
72.5
42
Minor 5ss
31.6
-2.1
2.7
34.9
34
Minor BPS
59.7
0.38
1.2
67.4
37.9

Associated Gene:

Gene:
PAXBP1
Ensembl Gene ID:
ENSAPLG00000011625
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043570
108314166 - 108340943
26778
ENSAPLT00000012163
108314166 - 108340943
26778