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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108333082_108334046_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
108333082 - 108334046
Intron Length:
965

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGACAG
5'SS Class:
major
3'SS Sequence:
CGTTGCCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGTTATTTATCC
Flanking Amino Acid:
IDLVKKQLKDRLDSMKELHK
Intron Amino Acid Position:
447

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
62.5
43.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
70.4
0.46
0.9
66
35.9
Minor 5ss
29.9
-2.3
3.3
37.9
47
Minor BPS
59.4
0.27
1.8
72.09
38.9

Associated Gene:

Gene:
PAXBP1
Ensembl Gene ID:
ENSAPLG00000011625
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043570
108314166 - 108340943
26778
ENSAPLT00000012163
108314166 - 108340943
26778