About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108335153_108335749_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108335153 - 108335749
Intron Length:
597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAACCT
5'SS Class:
strong_major
3'SS Sequence:
TATTCCACTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GTTTTGTTACCT
Flanking Amino Acid:
SQRQKIAEEIGIEGSDDEAL
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
71.4
38.4
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
78.9
0.65
0.8
75.4
34
Minor 5ss
34
-1.8
3.3
49.1
46.6
Minor BPS
54.4
0.22
2.3
79.89
42.3

Associated Gene:

Gene:
PAXBP1
Ensembl Gene ID:
ENSAPLG00000011625
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043570
108314166 - 108340943
26778
ENSAPLT00000012163
108314166 - 108340943
26778