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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108337832_108339472_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108337832 - 108339472
Intron Length:
1641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATTGCA
5'SS Class:
major
3'SS Sequence:
GTTGTCTTAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
GTTGTCTTAACA
Flanking Amino Acid:
VRTEVNSPTDVEPPLEKTGQ
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
69.6
34.5
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
74.9
0.56
1
69.8
40.4
Minor 5ss
33.2
-1.9
3.1
38.9
41.3
Minor BPS
75.1
0.79
1.3
79.59
36.6

Associated Gene:

Gene:
PAXBP1
Ensembl Gene ID:
ENSAPLG00000011625
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012163
108314166 - 108340943
26778