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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108345756_108346201_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108345756 - 108346201
Intron Length:
446

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTCAT
5'SS Class:
major
3'SS Sequence:
TCTTCTTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
AATTTCTTAATC
Flanking Amino Acid:
ENSSVVTCPKDFTFTSGKDT
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.2
71.7
39.5
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
88.2
0.86
0.7
80.8
31.2
Minor 5ss
38.3
-1.3
2.8
50.3
46
Minor BPS
77.5
0.84
1
77.63
31.4

Associated Gene:

Gene:
C21orf62
Ensembl Gene ID:
ENSAPLG00000011426
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011891
108344945 - 108357963
13019