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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108349830_108357720_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
108349830 - 108357720
Intron Length:
7891

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCCTG
5'SS Class:
major
3'SS Sequence:
CTCCAAACTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
CTTCTCCAAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
65.5
45.9
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
62.2
0.28
0.9
52.1
36.6
Minor 5ss
41.6
-0.9
3.1
56.4
47.8
Minor BPS
49.5
0.04
2
73.51
43.3

Associated Gene:

Gene:
C21orf62
Ensembl Gene ID:
ENSAPLG00000011426
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011891
108344945 - 108357963
13019