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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108376097_108377668_F

Intron Information:

Intron Rank:
138977
Intron Class:
major
Intron Phase:
Intron Coordinates:
108376097 - 108377668
Intron Length:
1572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGCACT
5'SS Class:
major
3'SS Sequence:
CCCTTCCATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCCCCTTCCATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
71.8
39.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
69.8
0.45
0.8
62.1
33.8
Minor 5ss
37.1
-1.5
3
51
45.2
Minor BPS
44.3
-0.4
1.9
51.09
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024806
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032108
108373167 - 108377968
4802