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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108404500_108408473_R

Intron Information:

Intron Rank:
128994
Intron Class:
major
Intron Phase:
Intron Coordinates:
108404500 - 108408473
Intron Length:
3974

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGCG
5'SS Class:
major
3'SS Sequence:
ATTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTGTTTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1.3
69.7
41.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
93.9
0.99
0.6
92.8
24.8
Minor 5ss
28.4
-2.5
2.9
33.2
41.8
Minor BPS
78.1
0.96
1
86.75
33.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016550
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019586
108404016 - 108417438
13423