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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108408702_108416842_R

Intron Information:

Intron Rank:
128995
Intron Class:
major
Intron Phase:
Intron Coordinates:
108408702 - 108416842
Intron Length:
8141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGCCTG
5'SS Class:
major
3'SS Sequence:
TTGTTTTGGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGAAAT
U12 Branch Point Sequence:
TTGTTTTGGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.7
0.37
1.3
55.7
48.6
Major BPS
48.8
-0
1.2
54.6
37.8
Major PPT
73.9
0.54
1.1
72.2
42.7
Minor 5ss
36.4
-1.5
3.3
47.5
48
Minor BPS
59.4
0.29
1.4
69.96
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016550
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039458
108407109 - 108417438
10330
ENSAPLT00000020703
108407109 - 108417438
10330
ENSAPLT00000019586
108404016 - 108417438
13423