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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108410707_108411646_F

Intron Information:

Intron Rank:
138691
Intron Class:
major
Intron Phase:
Intron Coordinates:
108410707 - 108411646
Intron Length:
940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGGGTAAA
5'SS Class:
major
3'SS Sequence:
TCCATCCCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ATAATCAGAAGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
72.3
34.3
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
72.7
0.51
0.8
69.4
31.1
Minor 5ss
30.6
-2.2
3
36.7
40.9
Minor BPS
42.6
-0.5
1.9
52.27
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024676
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026181
108409436 - 108413190
3755