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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108504593_108504774_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
108504593 - 108504774
Intron Length:
182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGTCG
5'SS Class:
major
3'SS Sequence:
CCCAAATTGGAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTTTCCCAAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.2
64
42.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
49.1
-0
1.2
48.1
38.2
Minor 5ss
42.6
-0.8
3.1
56.7
47.6
Minor BPS
58
0.33
2
80.27
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011364
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045039
108504035 - 108517337
13303