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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108506661_108509788_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108506661 - 108509788
Intron Length:
3128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
AATTCACTATTA
Flanking Amino Acid:
MGGPLRFYQFAYIICILCAA
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
74.9
36.2
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
88.5
0.87
0.7
80.8
36.5
Minor 5ss
40.7
-1
2.8
49.7
41.9
Minor BPS
46
-0.3
2.1
61.31
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011364
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045039
108504035 - 108517337
13303
ENSAPLT00000011832
108503937 - 108517337
13401