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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108512677_108513930_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108512677 - 108513930
Intron Length:
1254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCATGGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CTTTCTAAAACA
Flanking Amino Acid:
TLKTPDREHKMPLETTTKET
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
75.4
34.2
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
72.8
0.51
1
70.5
34.8
Minor 5ss
31.9
-2.1
3.2
42.1
45
Minor BPS
55
0.15
2
71.7
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011364
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045039
108504035 - 108517337
13303
ENSAPLT00000011832
108503937 - 108517337
13401