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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108514094_108514528_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108514094 - 108514528
Intron Length:
435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCACTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGTCTTTTCACT
Flanking Amino Acid:
CATAGSVAQQGYYSASFASA
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
1.1
85.2
32.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
87.5
0.84
0.7
82
28.7
Minor 5ss
44.2
-0.6
3.3
66.9
44.4
Minor BPS
58.6
0.35
1.7
77.46
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011364
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045039
108504035 - 108517337
13303
ENSAPLT00000011832
108503937 - 108517337
13401