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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108525837_108528105_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108525837 - 108528105
Intron Length:
2269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTATT
5'SS Class:
major
3'SS Sequence:
CTTTCCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TACTTCTCATTT
Flanking Amino Acid:
SYVFPQHLKEFLSKPPSGSQ
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.1
84.7
32.4
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
89.3
0.88
0.6
84.3
23.5
Minor 5ss
44.1
-0.6
2.5
60.5
43.9
Minor BPS
50.4
0.09
1.8
68.67
42.7

Associated Gene:

Gene:
IL10RB
Ensembl Gene ID:
ENSAPLG00000011342
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027030
108518850 - 108528318
9469
ENSAPLT00000011812
108519186 - 108528318
9133