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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108540041_108547960_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108540041 - 108547960
Intron Length:
7920

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGCCCC
5'SS Class:
major
3'SS Sequence:
TATTTTCTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTTCTTATAG
Flanking Amino Acid:
LLAAAPRRCAGQTDLKSPQD
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.3
61
42
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.7
0.8
0.7
81.1
30.6
Minor 5ss
34.6
-1.8
2.9
43.6
43.6
Minor BPS
59.1
0.15
1.8
66.72
40.9

Associated Gene:

Gene:
IFNAR1
Ensembl Gene ID:
ENSAPLG00000011322
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043645
108539956 - 108560903
20948
ENSAPLT00000011786
108539956 - 108560827
20872