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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108548082_108549549_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
108548082 - 108549549
Intron Length:
1468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
ACTCACCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
ATATTTTTAACT
Flanking Amino Acid:
TDVTFSAEYQWFGDPQTSET
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
74
0.54
0.9
66.1
34.8
Minor 5ss
37.6
-1.4
2.8
48.3
42.5
Minor BPS
78.6
0.98
1
86.73
32.4

Associated Gene:

Gene:
IFNAR1
Ensembl Gene ID:
ENSAPLG00000011322
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043645
108539956 - 108560903
20948
ENSAPLT00000026466
108538245 - 108560903
22659
ENSAPLT00000011786
108539956 - 108560827
20872