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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108549744_108550335_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108549744 - 108550335
Intron Length:
592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCATATTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTTCTTTCATA
Flanking Amino Acid:
SVFEMIPYFIAQIGPPEVHL
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
74.3
34.2
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
83.8
0.76
0.8
81.2
35.3
Minor 5ss
39.2
-1.2
3.4
56.9
47.4
Minor BPS
71.1
0.66
1.7
82.68
32.7

Associated Gene:

Gene:
IFNAR1
Ensembl Gene ID:
ENSAPLG00000011322
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026466
108538245 - 108560903
22659
ENSAPLT00000011786
108539956 - 108560827
20872
ENSAPLT00000043645
108539956 - 108560903
20948