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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108550494_108551409_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108550494 - 108551409
Intron Length:
916

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGTTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTGACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
CTGTCCACAATT
Flanking Amino Acid:
VIWENSSDAEVRSQNIFPVD
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
77.5
33.3
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
82.3
0.73
0.9
79.8
32.3
Minor 5ss
46.4
-0.4
3.1
63.9
47.7
Minor BPS
54
0.2
1.9
73.04
44.1

Associated Gene:

Gene:
IFNAR1
Ensembl Gene ID:
ENSAPLG00000011322
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043645
108539956 - 108560903
20948
ENSAPLT00000026466
108538245 - 108560903
22659
ENSAPLT00000011786
108539956 - 108560827
20872