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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108552140_108552504_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108552140 - 108552504
Intron Length:
365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACATAAA
5'SS Class:
major
3'SS Sequence:
CCATTTTATGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTTTTCCATT
Flanking Amino Acid:
ELRKSNARLDVNYLFCPANL
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
69.4
36.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
77.4
0.62
0.9
72.9
36.2
Minor 5ss
33.5
-1.9
3
38.7
41.6
Minor BPS
53.3
0.19
1.9
79.05
38

Associated Gene:

Gene:
IFNAR1
Ensembl Gene ID:
ENSAPLG00000011322
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011786
108539956 - 108560827
20872