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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108554933_108555717_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108554933 - 108555717
Intron Length:
785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGAACT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
TGTGTCTTACTC
Flanking Amino Acid:
VYWKNSSDNEEEKRVKEIKQ
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
79.9
32.9
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
92.7
0.96
0.6
91.8
19.2
Minor 5ss
42.2
-0.9
2.8
58.8
45.4
Minor BPS
55.8
0.16
1.7
66
40.4

Associated Gene:

Gene:
IFNAR1
Ensembl Gene ID:
ENSAPLG00000011322
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043645
108539956 - 108560903
20948
ENSAPLT00000026466
108538245 - 108560903
22659
ENSAPLT00000011786
108539956 - 108560827
20872