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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108555872_108558034_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108555872 - 108558034
Intron Length:
2163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAATT
5'SS Class:
strong_major
3'SS Sequence:
TCCACTTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTTCACA
Flanking Amino Acid:
SNEECIKTSPDKMLPLIILA
Intron Amino Acid Position:
459

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
84.6
33.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
78.3
0.64
0.8
76.5
32
Minor 5ss
38
-1.4
3.4
57.1
47.2
Minor BPS
69.5
0.61
1.7
82.25
33.1

Associated Gene:

Gene:
IFNAR1
Ensembl Gene ID:
ENSAPLG00000011322
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043645
108539956 - 108560903
20948
ENSAPLT00000026466
108538245 - 108560903
22659
ENSAPLT00000011786
108539956 - 108560827
20872