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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108558070_108558147_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
108558070 - 108558147
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
TAATAAAATCAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TTTTCCTGTATC
Flanking Amino Acid:
MLPLIILATFYVFFPSCTPP
Intron Amino Acid Position:
466

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1.1
69.3
36.6
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
49.5
-0
1.2
44.3
44.5
Minor 5ss
36.5
-1.5
3.2
51
39.8
Minor BPS
65.5
0.47
1.8
79.56
35.6

Associated Gene:

Gene:
IFNAR1
Ensembl Gene ID:
ENSAPLG00000011322
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026466
108538245 - 108560903
22659