Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108568319_108603992_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

108568319 - 108603992

Intron Length:

35674

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTTGGGTG

5'SS Class:

major

3'SS Sequence:

ACAGGCAGCTGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GAAACAT

U12 Branch Point Sequence:

GCTACCAGAAAC

Flanking Amino Acid:

TKEEEQENVKRFEISIAQKN

Intron Amino Acid Position:

357

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.2

0.45

1.2

61.6

42.8

Major BPS

48.2

-0.1

1.2

55.4

40.4

Major PPT

41.1

-0.5

1.6

39.6

Minor 5ss

35.3

-1.7

3.5

46.7

48.8

Minor BPS

45.8

-0.3

1.8

55.74

41.4

Associated Gene:

Gene:

DNAJC28

Ensembl Gene ID:

ENSAPLG00000011212

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011665

108567711 - 108605062

37352