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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108576967_108580182_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108576967 - 108580182
Intron Length:
3216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGTGGG
5'SS Class:
major
3'SS Sequence:
TTTCATGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTATTTTTATTT
Flanking Amino Acid:
LLGPARASGEDSSPRLPAPK
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
63.3
43.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79.3
0.66
0.9
77.4
36.6
Minor 5ss
25.6
-2.8
3.1
31.6
42.7
Minor BPS
64.7
0.54
1.5
79.8
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011237
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011703
108576847 - 108587688
10842