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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108583322_108593491_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
108583322 - 108593491
Intron Length:
10170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTCTCATAAAT
Flanking Amino Acid:
VFFQNALIFFRRKGSARPRQ
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.6
1.1
0.7
87.5
21.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
72.5
0.51
0.8
65.6
36.1
Minor 5ss
40.5
-1.1
2.8
52
45.2
Minor BPS
62.5
0.47
1.7
83.82
36.1

Associated Gene:

Gene:
TMEM50B
Ensembl Gene ID:
ENSAPLG00000011217
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032527
108580197 - 108600989
20793