Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108593550_108594213_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

108593550 - 108594213

Intron Length:

664

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTAAGTTTC

5'SS Class:

major

3'SS Sequence:

ACTTACTTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTAATAT

U12 Branch Point Sequence:

TGTTACTTACTT

Flanking Amino Acid:

WILFGAYVTQNTNVYPGLAV

Intron Amino Acid Position:

125

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.9

0.66

34.8

Major BPS

67.5

0.44

1.1

63.7

42.3

Major PPT

80.2

0.68

0.9

73.5

Minor 5ss

-0.4

2.7

58.2

40.5

Minor BPS

63.4

0.5

1.8

81.75

39.8

Associated Gene:

Gene:

TMEM50B

Ensembl Gene ID:

ENSAPLG00000011217

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032527

108580197 - 108600989

20793

ENSAPLT00000011669

108591322 - 108597425

6104