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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108596612_108597247_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108596612 - 108597247
Intron Length:
636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTATTTTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTTATTTTATTT
Flanking Amino Acid:
AVASIVAGVLFFTGWWIMID
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
85.8
25.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76.8
0.6
1.1
80.6
35.6
Minor 5ss
42
-0.9
2.9
55
43.6
Minor BPS
55.9
0.26
1.6
72.59
38.9

Associated Gene:

Gene:
TMEM50B
Ensembl Gene ID:
ENSAPLG00000011217
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032527
108580197 - 108600989
20793
ENSAPLT00000011669
108591322 - 108597425
6104