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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108611400_108612195_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108611400 - 108612195
Intron Length:
796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
GATAGCTTAATT
Flanking Amino Acid:
TADNGKISNSAVLVSNHTIV
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68.8
42.1
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
94
0.99
0.5
92.6
17.2
Minor 5ss
32.2
-2
3
40.4
45.3
Minor BPS
60.4
0.41
1.8
74.91
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010573
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011000
108611251 - 108631912
20662