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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108612292_108612950_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108612292 - 108612950
Intron Length:
659

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCTGG
5'SS Class:
major
3'SS Sequence:
TTTTGATAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTTGATAATT
Flanking Amino Acid:
LVGQEALLAAGIVDDLRAAG
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
62.4
44.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
68.5
0.42
1
68.6
41.4
Minor 5ss
43.4
-0.7
2.9
52.7
46.4
Minor BPS
56.2
0.27
2.3
84.17
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010573
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011000
108611251 - 108631912
20662