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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108615457_108616288_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108615457 - 108616288
Intron Length:
832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTATGTGAT
5'SS Class:
major
3'SS Sequence:
CCTCTCTTAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAC
U12 Branch Point Sequence:
CCTCTCTTAACA
Flanking Amino Acid:
EELLQGEELSCLCFTDGVTV
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.9
0.42
1.1
67.4
37.7
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
76.9
0.6
0.8
72.5
30.8
Minor 5ss
43.4
-0.7
3.2
67
44.2
Minor BPS
70.8
0.65
1.3
72.02
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010573
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011000
108611251 - 108631912
20662