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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108617267_108618671_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108617267 - 108618671
Intron Length:
1405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTGAGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTTCCTGATTG
Flanking Amino Acid:
SMRQEGAAYVGVLQTGLMLT
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.7
83.1
30.9
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
80
0.67
1
78.2
34.9
Minor 5ss
29.6
-2.3
2.6
32.5
42.4
Minor BPS
62.8
0.27
1.8
72.32
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010573
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011000
108611251 - 108631912
20662