Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108622068_108624106_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

108622068 - 108624106

Intron Length:

2039

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACTTGC

5'SS Class:

strong_major

3'SS Sequence:

CCATGTTTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTCAC

U12 Branch Point Sequence:

CTGTTGTCACCA

Flanking Amino Acid:

QTKGLGSKLQVAQACKRHDT

Intron Amino Acid Position:

499

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

1.1

73.2

39.3

Major BPS

74.9

0.62

1.1

77.4

37.4

Major PPT

78.3

0.64

0.9

72.1

37.6

Minor 5ss

46.1

-0.4

2.6

62.1

42.6

Minor BPS

41.9

-0.6

2.3

54.21

44.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010573

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011000

108611251 - 108631912

20662