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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108625135_108625426_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108625135 - 108625426
Intron Length:
292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACAACAT
5'SS Class:
major
3'SS Sequence:
CTTTTGTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TCTGATTGAACT
Flanking Amino Acid:
APGSCGDKTLGDVLLTPAKL
Intron Amino Acid Position:
649

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
65.1
40.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
88.9
0.88
0.7
84
31
Minor 5ss
31.9
-2.1
3.5
47.5
47.9
Minor BPS
54.2
0.21
1.8
73.41
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010573
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011000
108611251 - 108631912
20662