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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108630118_108631230_F

Intron Information:

Intron Rank:
19
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
108630118 - 108631230
Intron Length:
1113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
CGCCAATGTCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TTTTCTCTCACG
Flanking Amino Acid:
LSSPFLRKWKGKILNASPSL
Intron Amino Acid Position:
908

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
84.2
26.4
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
56.2
0.14
1
46.5
40.3
Minor 5ss
33.8
-1.8
2.9
42.8
44.4
Minor BPS
55.7
0.04
2.1
71.75
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010573
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011000
108611251 - 108631912
20662