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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108634486_108635785_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108634486 - 108635785
Intron Length:
1300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGGAC
5'SS Class:
major
3'SS Sequence:
TTCCTTTTCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCAAAA
U12 Branch Point Sequence:
TTTCCTTGGATT
Flanking Amino Acid:
LQLVASGAVQGIS*
Intron Amino Acid Position:
1012

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
63.5
37
Major BPS
59.3
0.23
1
65.3
28.1
Major PPT
74.5
0.55
1
74.4
34.1
Minor 5ss
22.7
-3.1
3.5
30.5
43.7
Minor BPS
63
0.49
1.4
81.17
34.3

Associated Gene:

Gene:
GART
Ensembl Gene ID:
ENSAPLG00000008933
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022302
108634474 - 108671122
36649