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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108641675_108642303_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108641675 - 108642303
Intron Length:
629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCACTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TATTCATGAATT
Flanking Amino Acid:
VKVAVLISGTGTNLEALINS
Intron Amino Acid Position:
814

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
84.1
26.5
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
85.6
0.8
0.8
85.6
27.8
Minor 5ss
30.9
-2.2
3.5
46.6
48.7
Minor BPS
65.8
0.57
1.7
83.85
36.3

Associated Gene:

Gene:
GART
Ensembl Gene ID:
ENSAPLG00000008933
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009464
108635753 - 108668276
32524
ENSAPLT00000032784
108634516 - 108671122
36607
ENSAPLT00000032437
108635121 - 108671122
36002
ENSAPLT00000031100
108634516 - 108665279
30764
ENSAPLT00000040230
108616623 - 108664316
47694
ENSAPLT00000022302
108634474 - 108671122
36649
ENSAPLT00000039337
108634516 - 108667017
32502